Detailed information of SNP:
|
SNP ID:
sf0800492307(Gbrowse)
Chromosome: chr08 Position: 492307 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 51.41% | 48.59% |
| All Indica | 794 | 31.99% | 68.01% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 372 | 36.29% | 63.71% |
| Indica II | 212 | 13.68% | 86.32% |
| Indica Intermediate | 210 | 42.86% | 57.14% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800492307 | C->T | INTERGENIC | None |