Detailed information of SNP:
|
SNP ID:
sf0800494835(Gbrowse)
Chromosome: chr08 Position: 494835 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.84% | 41.16% |
| All Indica | 799 | 38.55% | 61.45% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 50.67% | 49.33% |
| Indica II | 213 | 14.08% | 85.92% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800494835 | C->G | INTERGENIC | None |