Detailed information of SNP:
|
SNP ID:
sf0800501770(Gbrowse)
Chromosome: chr08 Position: 501770 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.78% | 43.22% |
| All Indica | 797 | 79.92% | 20.08% |
| All Japonica | 496 | 12.50% | 87.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 83.11% | 16.89% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 52.69% | 47.31% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800501770 | G->A | INTERGENIC | None |