Detailed information of SNP:
|
SNP ID:
sf0800503858(Gbrowse)
Chromosome: chr08 Position: 503858 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 62.45% | 37.55% |
| All Indica | 794 | 50.25% | 49.75% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 372 | 61.56% | 38.44% |
| Indica II | 211 | 28.44% | 71.56% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800503858 | C->T | INTERGENIC | None |