Detailed information of SNP:
|
SNP ID:
sf0800516477(Gbrowse)
Chromosome: chr08 Position: 516477 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 87.09% | 12.91% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800516477 | G->C | LOC_Os08g01840(LOC_Os08g01840.1) | INTRON |