Detailed information of SNP:
|
SNP ID:
sf0800528132(Gbrowse)
Chromosome: chr08 Position: 528132 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 65.40% | 34.60% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800528132 | C->T | INTERGENIC | None |