Detailed information of SNP:
|
SNP ID:
sf0800541016(Gbrowse)
Chromosome: chr08 Position: 541016 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.64% | 22.36% |
| All Indica | 799 | 63.45% | 36.55% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 211 | 68.72% | 31.28% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800541016 | C->T | INTERGENIC | None |