Detailed information of SNP:
|
SNP ID:
sf0800541399(Gbrowse)
Chromosome: chr08 Position: 541399 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 64.53% | 35.47% |
| All Indica | 788 | 42.77% | 57.23% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 22 | 27.27% | 72.73% |
| Indica I | 373 | 30.83% | 69.17% |
| Indica II | 208 | 62.02% | 37.98% |
| Indica Intermediate | 207 | 44.93% | 55.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800541399 | G->A | INTERGENIC | None |