Detailed information of SNP:
|
SNP ID:
sf0800544388(Gbrowse)
Chromosome: chr08 Position: 544388 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 54.70% | 45.30% |
| All Indica | 796 | 30.15% | 69.85% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 16.84% | 83.16% |
| Indica II | 211 | 58.77% | 41.23% |
| Indica Intermediate | 211 | 25.12% | 74.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800544388 | G->A | INTERGENIC | None |