Detailed information of SNP:



SNP ID: sf0800544388(Gbrowse)

Chromosome: chr08

Position: 544388
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 54.70% 45.30%
All Indica796 30.15% 69.85%
All Japonica497 98.79% 1.21%
Aus67 8.96% 91.04%
Indica I374 16.84% 83.16%
Indica II211 58.77% 41.23%
Indica Intermediate211 25.12% 74.88%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 58.54% 41.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0800544388 G->A INTERGENIC None