Detailed information of SNP:
|
SNP ID:
sf0800556142(Gbrowse)
Chromosome: chr08 Position: 556142 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.75% | 8.25% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800556142 | C->T | INTERGENIC | None |