Detailed information of SNP:
|
SNP ID:
sf0800558145(Gbrowse)
Chromosome: chr08 Position: 558145 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 57.50% | 42.50% |
| All Indica | 791 | 72.31% | 27.69% |
| All Japonica | 497 | 27.16% | 72.84% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 370 | 84.59% | 15.41% |
| Indica II | 212 | 49.06% | 50.94% |
| Indica Intermediate | 209 | 74.16% | 25.84% |
| Temperate Japonica | 335 | 35.82% | 64.18% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800558145 | C->T | INTERGENIC | None |