Detailed information of SNP:
|
SNP ID:
sf0800580691(Gbrowse)
Chromosome: chr08 Position: 580691 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.79% | 31.21% |
| All Indica | 796 | 45.73% | 54.27% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 32.89% | 67.11% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 209 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800580691 | G->A | LOC_Os08g01940(LOC_Os08g01940.1) | INTRON |
| sf0800580691 | G->A | LOC_Os08g01940(LOC_Os08g01940.2) | INTRON |