Detailed information of SNP:
|
SNP ID:
sf0800591272(Gbrowse)
Chromosome: chr08 Position: 591272 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.37% | 37.63% |
| All Indica | 799 | 43.30% | 56.70% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 32.27% | 67.73% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800591272 | G->T | INTERGENIC | None |