Detailed information of SNP:
|
SNP ID:
sf0800595392(Gbrowse)
Chromosome: chr08 Position: 595392 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 80.39% | 19.61% |
| All Indica | 798 | 74.44% | 25.56% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800595392 | A->G | LOC_Os08g01950(LOC_Os08g01950.1) | INTRON |