Detailed information of SNP:
|
SNP ID:
sf0800628037(Gbrowse)
Chromosome: chr08 Position: 628037 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 92.72% | 7.28% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 482 | 80.08% | 19.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 72.14% | 27.86% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800628037 | T->C | INTERGENIC | None |