Detailed information of SNP:
|
SNP ID:
sf0800647461(Gbrowse)
Chromosome: chr08 Position: 647461 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.73% | 48.27% |
| All Indica | 799 | 27.03% | 72.97% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 15.47% | 84.53% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 211 | 23.22% | 76.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800647461 | A->C | LOC_Os08g02010(LOC_Os08g02010.1) | INTRON |