Detailed information of SNP:
|
SNP ID:
sf0800647941(Gbrowse)
Chromosome: chr08 Position: 647941 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.59% | 36.41% |
| All Indica | 798 | 44.99% | 55.01% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 32.00% | 68.00% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800647941 | G->T | INTERGENIC | None |