Detailed information of SNP:
|
SNP ID:
sf0800651241(Gbrowse)
Chromosome: chr08 Position: 651241 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 91.14% | 8.86% |
| All Indica | 772 | 84.72% | 15.28% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 357 | 78.15% | 21.85% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 205 | 85.37% | 14.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800651241 | G->A | INTERGENIC | None |