Detailed information of SNP:
|
SNP ID:
sf0800666883(Gbrowse)
Chromosome: chr08 Position: 666883 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 97.59% | 2.41% |
| All Indica | 714 | 96.08% | 3.92% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 344 | 98.55% | 1.45% |
| Indica II | 174 | 88.51% | 11.49% |
| Indica Intermediate | 196 | 98.47% | 1.53% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800666883 | G->A | INTERGENIC | None |