Detailed information of SNP:
|
SNP ID:
sf0800666918(Gbrowse)
Chromosome: chr08 Position: 666918 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1262 | 81.46% | 18.54% |
| All Indica | 650 | 74.92% | 25.08% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 301 | 70.43% | 29.57% |
| Indica II | 191 | 88.48% | 11.52% |
| Indica Intermediate | 158 | 67.09% | 32.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800666918 | T->C | INTERGENIC | None |