Detailed information of SNP:
|
SNP ID:
sf0800669658(Gbrowse)
Chromosome: chr08 Position: 669658 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 64.18% | 35.82% |
| All Indica | 794 | 45.97% | 54.03% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 60 | 8.33% | 91.67% |
| Indica I | 375 | 33.87% | 66.13% |
| Indica II | 209 | 71.29% | 28.71% |
| Indica Intermediate | 210 | 42.38% | 57.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800669658 | G->A | INTERGENIC | None |