Detailed information of SNP:
|
SNP ID:
sf0800677290(Gbrowse)
Chromosome: chr08 Position: 677290 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 58.00% | 42.00% |
| All Indica | 795 | 36.73% | 63.27% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 43.73% | 56.27% |
| Indica II | 210 | 20.00% | 80.00% |
| Indica Intermediate | 210 | 40.95% | 59.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800677290 | T->G | INTERGENIC | None |