Detailed information of SNP:
|
SNP ID:
sf0800720786(Gbrowse)
Chromosome: chr08 Position: 720786 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 61.76% | 38.24% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 438 | 2.51% | 97.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 293 | 1.37% | 98.63% |
| Tropical Japonica | 88 | 7.95% | 92.05% |
| Japonica Intermediate | 57 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800720786 | A->C | LOC_Os08g02150(LOC_Os08g02150.1) | Non-Synonymous SNP |