Detailed information of SNP:
|
SNP ID:
sf0800727758(Gbrowse)
Chromosome: chr08 Position: 727758 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.53% | 41.47% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800727758 | A->G | INTERGENIC | None |