Detailed information of SNP:
|
SNP ID:
sf0800760714(Gbrowse)
Chromosome: chr08 Position: 760714 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 88.76% | 11.24% |
| All Indica | 791 | 88.87% | 11.13% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 369 | 83.20% | 16.80% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800760714 | A->C | INTERGENIC | None |