Detailed information of SNP:
|
SNP ID:
sf0800813632(Gbrowse)
Chromosome: chr08 Position: 813632 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1251 | 94.00% | 6.00% |
| All Indica | 778 | 99.87% | 0.13% |
| All Japonica | 355 | 80.00% | 20.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 202 | 99.50% | 0.50% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 224 | 69.64% | 30.36% |
| Tropical Japonica | 75 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 94.64% | 5.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800813632 | C->T | INTERGENIC | None |