Detailed information of SNP:



SNP ID: sf0800827689(Gbrowse)

Chromosome: chr08

Position: 827689
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1419 97.74% 2.26%
All Indica799 95.99% 4.01%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 92.80% 7.20%
Indica II213 100.00% 0.00%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0800827689 C->A INTERGENIC None