Detailed information of SNP:
|
SNP ID:
sf0800847983(Gbrowse)
Chromosome: chr08 Position: 847983 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 74.44% | 25.56% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 494 | 46.76% | 53.24% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 333 | 46.55% | 53.45% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800847983 | T->C | INTERGENIC | None |