Detailed information of SNP:
|
SNP ID:
sf0800859316(Gbrowse)
Chromosome: chr08 Position: 859316 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 53.90% | 46.10% |
| All Indica | 779 | 93.84% | 6.16% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 360 | 98.61% | 1.39% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800859316 | A->G | INTERGENIC | None |