Detailed information of SNP:
|
SNP ID:
sf0800937998(Gbrowse)
Chromosome: chr08 Position: 937998 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 92.78% | 7.22% |
| All Indica | 743 | 87.35% | 12.65% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 329 | 80.85% | 19.15% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 201 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0800937998 | C->T | LOC_Os08g02360(LOC_Os08g02360.1) | INTRON |