Detailed information of SNP:
SNP ID:
sf0800992771(Gbrowse)
Chromosome: chr08 Position: 992771 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1406 | 96.73% | 3.27% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 484 | 90.50% | 9.50% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 324 | 86.42% | 13.58% |
Tropical Japonica | 93 | 97.85% | 2.15% |
Japonica Intermediate | 67 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0800992771 | C->T | INTERGENIC | None |