Detailed information of SNP:
|
SNP ID:
sf0801086395(Gbrowse)
Chromosome: chr08 Position: 1086395 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 59.69% | 40.31% |
| All Indica | 796 | 34.17% | 65.83% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 35.83% | 64.17% |
| Indica II | 213 | 22.54% | 77.46% |
| Indica Intermediate | 209 | 43.06% | 56.94% |
| Temperate Japonica | 334 | 93.11% | 6.89% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801086395 | A->T | INTERGENIC | None |