Detailed information of SNP:
|
SNP ID:
sf0801091924(Gbrowse)
Chromosome: chr08 Position: 1091924 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 98.66% | 1.34% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801091924 | G->A | LOC_Os08g02640(LOC_Os08g02640.3) | INTRON |
| sf0801091924 | G->A | LOC_Os08g02640(LOC_Os08g02640.4) | INTRON |
| sf0801091924 | G->A | LOC_Os08g02640(LOC_Os08g02640.1) | Synonymous |
| sf0801091924 | G->A | LOC_Os08g02640(LOC_Os08g02640.2) | INTRON |
| sf0801091924 | G->A | LOC_Os08g02640(LOC_Os08g02640.5) | INTRON |