Detailed information of SNP:
|
SNP ID:
sf0801159174(Gbrowse)
Chromosome: chr08 Position: 1159174 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 61.31% | 38.69% |
| All Indica | 766 | 37.99% | 62.01% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 59 | 35.59% | 64.41% |
| Indica I | 355 | 34.37% | 65.63% |
| Indica II | 205 | 26.34% | 73.66% |
| Indica Intermediate | 206 | 55.83% | 44.17% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801159174 | T->A | INTERGENIC | None |