Detailed information of SNP:
|
SNP ID:
sf0801222133(Gbrowse)
Chromosome: chr08 Position: 1222133 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 88.15% | 11.85% |
| All Indica | 789 | 99.62% | 0.38% |
| All Japonica | 461 | 66.81% | 33.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 202 | 99.50% | 0.50% |
| Temperate Japonica | 321 | 58.88% | 41.12% |
| Tropical Japonica | 88 | 94.32% | 5.68% |
| Japonica Intermediate | 52 | 69.23% | 30.77% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801222133 | C->T | INTERGENIC | None |