Detailed information of SNP:
|
SNP ID:
sf0801222465(Gbrowse)
Chromosome: chr08 Position: 1222465 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 95.40% | 4.60% |
| All Indica | 753 | 92.16% | 7.84% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 347 | 89.05% | 10.95% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 199 | 92.96% | 7.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801222465 | G->T | INTERGENIC | None |