Detailed information of SNP:
|
SNP ID:
sf0801234871(Gbrowse)
Chromosome: chr08 Position: 1234871 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 72.27% | 27.73% |
| All Indica | 761 | 51.25% | 48.75% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 360 | 39.72% | 60.28% |
| Indica II | 204 | 65.20% | 34.80% |
| Indica Intermediate | 197 | 57.87% | 42.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801234871 | A->T | INTERGENIC | None |