Detailed information of SNP:
|
SNP ID:
sf0801236294(Gbrowse)
Chromosome: chr08 Position: 1236294 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 51.78% | 48.22% |
| All Indica | 765 | 30.33% | 69.67% |
| All Japonica | 492 | 89.43% | 10.57% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 357 | 22.41% | 77.59% |
| Indica II | 205 | 40.49% | 59.51% |
| Indica Intermediate | 203 | 33.99% | 66.01% |
| Temperate Japonica | 333 | 90.69% | 9.31% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801236294 | A->G | LOC_Os08g02890(LOC_Os08g02890.1) | Non-Synonymous SNP |