Detailed information of SNP:
|
SNP ID:
sf0801275121(Gbrowse)
Chromosome: chr08 Position: 1275121 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 69.79% | 30.21% |
| All Indica | 790 | 76.84% | 23.16% |
| All Japonica | 495 | 54.95% | 45.05% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 372 | 66.94% | 33.06% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 333 | 58.26% | 41.74% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801275121 | T->C | LOC_Os08g02930(LOC_Os08g02930.1) | INTRON |