Detailed information of SNP:
|
SNP ID:
sf0801306170(Gbrowse)
Chromosome: chr08 Position: 1306170 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 96.03% | 3.97% |
| All Indica | 739 | 92.83% | 7.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 328 | 91.16% | 8.84% |
| Indica II | 207 | 96.14% | 3.86% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801306170 | G->A | LOC_Os08g02990(LOC_Os08g02990.1) | SNPs that introduce stop codons |