Detailed information of SNP:
|
SNP ID:
sf0801310226(Gbrowse)
Chromosome: chr08 Position: 1310226 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 80.75% | 19.25% |
| All Indica | 799 | 75.47% | 24.53% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801310226 | A->G | LOC_Os08g02996(LOC_Os08g02996.1) | Non-Synonymous SNP |
| sf0801310226 | A->G | LOC_Os08g02996(LOC_Os08g02996.2) | Non-Synonymous SNP |