Detailed information of SNP:
|
SNP ID:
sf0801339530(Gbrowse)
Chromosome: chr08 Position: 1339530 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 82.80% | 17.20% |
| All Indica | 799 | 77.22% | 22.78% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801339530 | A->T | INTERGENIC | None |