Detailed information of SNP:
|
SNP ID:
sf0801341229(Gbrowse)
Chromosome: chr08 Position: 1341229 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.93% | 26.07% |
| All Indica | 799 | 63.33% | 36.67% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 56.00% | 44.00% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801341229 | G->T | LOC_Os08g03020(LOC_Os08g03020.1) | Non-Synonymous SNP |