Detailed information of SNP:
|
SNP ID:
sf0801343291(Gbrowse)
Chromosome: chr08 Position: 1343291 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 95.94% | 4.06% |
| All Indica | 787 | 94.03% | 5.97% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 367 | 92.92% | 7.08% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801343291 | C->T | INTERGENIC | None |