Detailed information of SNP:
|
SNP ID:
sf0801446169(Gbrowse)
Chromosome: chr08 Position: 1446169 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 82.92% | 17.08% |
| All Indica | 797 | 77.16% | 22.84% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 66.93% | 33.07% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801446169 | A->T | INTERGENIC | None |