Detailed information of SNP:
|
SNP ID:
sf0801450647(Gbrowse)
Chromosome: chr08 Position: 1450647 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 85.83% | 14.17% |
| All Indica | 793 | 75.28% | 24.72% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 372 | 64.52% | 35.48% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 76.08% | 23.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801450647 | T->C | INTERGENIC | None |