Detailed information of SNP:
|
SNP ID:
sf0801465222(Gbrowse)
Chromosome: chr08 Position: 1465222 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 75.09% | 24.91% |
| All Indica | 784 | 61.86% | 38.14% |
| All Japonica | 491 | 94.09% | 5.91% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 371 | 62.26% | 37.74% |
| Indica II | 206 | 67.96% | 32.04% |
| Indica Intermediate | 207 | 55.07% | 44.93% |
| Temperate Japonica | 329 | 91.79% | 8.21% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801465222 | T->C | INTERGENIC | None |