Detailed information of SNP:
|
SNP ID:
sf0801473451(Gbrowse)
Chromosome: chr08 Position: 1473451 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 70.24% | 29.76% |
| All Indica | 782 | 56.27% | 43.73% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 368 | 54.62% | 45.38% |
| Indica II | 206 | 69.42% | 30.58% |
| Indica Intermediate | 208 | 46.15% | 53.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801473451 | G->C | INTERGENIC | None |