Detailed information of SNP:
|
SNP ID:
sf0801492128(Gbrowse)
Chromosome: chr08 Position: 1492128 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 65.54% | 34.46% |
| All Indica | 792 | 98.23% | 1.77% |
| All Japonica | 481 | 7.48% | 92.52% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 328 | 8.54% | 91.46% |
| Tropical Japonica | 86 | 4.65% | 95.35% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801492128 | A->T | LOC_Os08g03210(LOC_Os08g03210.1) | Non-Synonymous SNP |