Detailed information of SNP:
|
SNP ID:
sf0801521957(Gbrowse)
Chromosome: chr08 Position: 1521957 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 71.86% | 28.14% |
| All Indica | 798 | 61.03% | 38.97% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 57.07% | 42.93% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0801521957 | A->G | INTERGENIC | None |